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Selected Journal Papers

(# indicates I am the paper's corresponding author)

1. Songyuan Yang, Weijiang Yu^#, Wenjing Yang, Xinwang Liu, Huibin Tan, Long Lan, Nong Xiao. "WildVideo: Benchmarking LMMs for Understanding Video-Language Interaction". IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2025


2. Yuansong Zeng, Jiancong Xie, Zhuoyi Wei, Yun Su, Ningyuan Shangguan, Shuangyu Yang, Chengyang Zhang, Wenbing Li, Jinbo Zhang, Nan Fang, Hongyu Zhang, Huiying Zhao, Yutong Lu, Jue Fan, Weijiang Yu^#, Yuedong Yang. "CellFM: a large-scale foundation model pre-trained on transcriptomics of 100 million human cells". Nature Communications, 2025


3. Yuansong Zeng, Jianing Chen, Zixiang Pan, Weijiang Yu^#, Yuedong Yang. "Integrating Single-cell Multi-omics Data through Self-supervised Clustering"". Applied Soft Computing, 2025


4. Haotian Wang, Xiyuan Du, Weijiang Yu, Qianglong Chen, Kun Zhu, Zheng Chu, Lian Yan, Yi Guan. "Learning to Break: Knowledge-Enhanced Reasoning in Multi-Agent Debate System". Neurocomputing, 2025


5. Fudan Zheng, Jindong Cao, Weijiang Yu^#, Zhiguang Chen, Nong Xiao, Yutong Lu. "Exploring Low-Resource Medical Image Classification with Weakly Supervised Prompt Learning". Pattern Recognition, 2024


6. Yingpeng Wen, Weijiang Yu^#, Fudan Zheng, Dan Huang, Nong Xiao. "AdaNAS: Adaptively Post-processing with Self-supervised Neural Architecture Search for Ensemble Rainfall Forecasts". IEEE Transactions on Geoscience and Remote Sensing (TGRS), 2024


7. Lei Huang, Weijiang Yu, Weitao Ma, Weihong Zhong, Zhangyin Feng, Haotian Wang, Qianglong Chen, Weihua Peng, Xiaocheng Feng, Bing Qin, Ting Liu. "A Survey on Hallucination in Large Language Models: Principles, Taxonomy, Challenges, and Open Questions". ACM Transactions on Information Systems (TOIS), 2024


8. Fudan Zheng, Mengfei Li, Ying Wang, Weijiang Yu^#, Ruixuan Wang, Nong Xiao, Yutong Lu, Zhiguang Chen. "Intensive Vision-guided Network for Radiology Report Generation". Physics in Medicine and Biology , 2024


9. Yuansong Zeng, Mai Luo, Ningyuan Shangguan, Peiyu Shi, Junxi Feng, Jin Xu, Jin Xu, Ken Chen, Yutong Lu, Weijiang Yu, and Yuedong Yang. "Deciphering Cell Types by Integrating scATAC-seq Data with Genome Sequences". Nature Computational Science, 2024


10. Yuansong Zeng, Yujie Song, Chengyang Zhang, Haoxuan Li, Yongkang Zhao, Weijiang Yu, Shiqi Zhang, Hongyu Zhang, Zhiming Dai, Yuedong Yang. "Imputing Spatial Transcriptomics through Gene Network Constructed from Protein Language Model". Communication Biology, 2024


11. Weijiang Yu, Haofan Wang, Guohao Li, Nong Xiao, Bernard Ghanem. "Knowledge-aware Global Reasoning for Situation Recognition". IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2023


12. Siyao Li, Weijiang Yu, Tianpei Gu, Chunze Lin, Quan Wang, Chen Qian, Chen Change Loy, Ziwei Liu. "Bailando++: 3D Dance GPT with Choreographic Memory". IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2023


13. Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu^#, Yutong Lu, Jianzhao Gao, Yuedong Yang. "Identifying B-cell Epitopes using AlphaFold2 Predicted Structures and Pre-trained Language Model". Bioinformatics, 2023


14. Yuansong Zeng, Rui Yin, Mai Luo, Jianing Chen, Zixiang Pan, Yutong Lu, Weijiang Yu^#, Yuedong Yang. "Identifying Spatial Domain by Adapting Transcriptomics with Histology through Contrastive Learning". Briefings in Bioinformatics (BIB), 2023


15. Yuansong Zeng, Zhuoyi Wei, Weijiang Yu, Rui Yin, Bingling Li, Zhonghui Tang, Yutong Lu, Yuedong Yang. "Spatial Transcriptomics Prediction from Histology jointly through Transformer and Graph Neural Networks". Briefings in Bioinformatics (BIB), 2022


16. Yingpeng Wen, Weijiang Yu^#, Dongsheng Li, Jiangsu Du, Dan Huang, Nong Xiao. "CosNAS: Enhancing Estimation on Cosmological Parameters via Neural Architecture Search". New Astronomy, 2022


17. 魏琢艺，罗迈，李文兵，曾远松，余伟江, 杨跃东. "基于多源域适应的单细胞智能分类". 《计算机工程》, 2023

Selected Conference Papers

(# indicates I am the paper's corresponding author)

1. Yihong Ji, Yunze Liu, Yiyao Zhuo, Weijiang Yu, Fei Ma, Joshua Zhexue Huang, Fei Yu. "OnlineHOI: Towards Online Human-Object Interaction Generation and Perception>". ACM International Conference on Multimedia (ACM MM), 2025


2. Congzhi Zhang, Jiawei Peng, Zhenglin Wang, Yilong Lai, Haowen Sun, Heng Chang, Fei Ma, Weijiang Yu^#. "VReST: Enhancing Reasoning in Large Vision-Language Models through Tree Search and Self-Reward Mechanism>". Annual Meeting of the Association for Computational Linguistics (ACL), 2025


3. Shixin Jiang, Jiafeng Liang, Jiyuan Wang, Xuan Dong, Heng Chang, Weijiang Yu, Jinhua Du, Ming Liu, Bing Qin. "From Specific-MLLMs to Omni-MLLMs: A Survey on MLLMs Aligned with Multi-modalities". Annual Meeting of the Association for Computational Linguistics (ACL), Findings, 2025


4. Xunzhi Xiang, Haiwei Xue, Zonghong Dai, Di Wang, Minglei Li, Ye Yue, Fei Ma, Weijiang Yu^#, Heng Chang, Fei Richard Yu. "Refined Character Image Animation Using Mask-Guided Adapters". AAAI Conference on Artificial Intelligence (AAAI), 2025


5. Yifan Xie, Tao Feng, Xin Zhang, Xiangyang Luo, Zixuan Guo, Weijiang Yu, Heng Chang, Fei Ma, Fei Richard Yu. "PointTalk: Audio-Driven Dynamic Lip Point Cloud for 3D Gaussian-based Talking Head Synthesis". AAAI Conference on Artificial Intelligence (AAAI), 2025


6. Xin Zhang, Siting Huang, Xiangyang Luo, Yifan Xie, Weijiang Yu, Heng Chang, Fei Ma, Fei Yu. "MuseFace: Text-driven Face Editing via Diffusion-based Mask Generation Approach. IEEE International Conference on Multimedia&Expo (ICME), 2025


7. Tianyu Lin, Zhonghao Yan, and Zhiguang Chen, Weijiang Yu^#, Fudan Zheng. "Stable Diffusion Segmentation for Biomedical Images with Single-step Reverse Process". Medical Image Computing and Computer Assisted Intervention (MICCAI), 2024


8. Xinzi Cao, Xiawu Zheng, Guanhong Wang, Weijiang Yu, Yunhang Shen, Ke Li, Yutong Lu, Yonghong Tian. "Solving the Catastrophic Forgetting Problem in Generalized Category Discovery". IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2024


9. Xiangyang Luo, Xin Zhang, Yifan Xie, Xinyi Tong, Weijiang Yu, Heng Chang, Fei Ma, Fei Richard Yu. "CodeSwap: Symmetrically Face Swapping Based on Prior Codebook". ACM International Conference on Multimedia (ACM MM), 2024


10. Kun Zhu, Xiaocheng Feng, Xiyuan Du, Yuxuan Gu, Weijiang Yu, Haotian Wang, Qianglong Chen, Zheng Chu, Jingchang Chen, Bing Qin. "An Information Bottleneck Perspective for Effective Noise Filtering on Retrieval-Augmented Generation". Annual Meeting of the Association for Computational Linguistics (ACL), 2024


11. Zheng Chu, Jingchang Chen, Qianglong Chen, Weijiang Yu, Tao He, Haotian Wang, Weihua Peng, Ming Liu, Bing Qin, Ting Liu. "Navigate through Enigmatic Labyrinth A Survey of Chain of Thought Reasoning: Advances, Frontiers and Future". Annual Meeting of the Association for Computational Linguistics (ACL), 2024


12. Zheng Chu, Jingchang Chen, Qianglong Chen, Weijiang Yu, Haotian Wang, Ming Liu, Bing Qin. "TimeBench: A Comprehensive Evaluation of Temporal Reasoning Abilities in Large Language Models". Annual Meeting of the Association for Computational Linguistics (ACL), 2024


13. Zheng Chu, Jingchang Chen, Qianglong Chen, Haotian Wang, Kun Zhu, Xiyuan Du, Weijiang Yu, Ming Liu, Bing Qin. "BeamAggR: Beam Aggregation Reasoning over Multi-source Knowledge for Multi-hop Question Answering". Annual Meeting of the Association for Computational Linguistics (ACL), 2024


14. Lei Huang, Xiaocheng Feng, Weitao Ma, Yuxuan Gu, Weihong Zhong, Xiachong Feng, Weijiang Yu, Weihua Peng, Duyu Tang, Dandan Tu, Bing Qin. "Learning Fine-Grained Grounded Citations for Attributed Large Language Models". The 62nd Annual Meeting of the Association for Computational Linguistics (ACL), Findings, 2024


15. Siyao Li, Weijiang Yu, Tianpei Gu, Chunze Lin, Quan Wang, Chen Qian, Chen Change Loy, Ziwei Liu. "Bailando: 3D Dance Generation by Actor-Critic GPT with Choreographic Memory". IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2022 (Oral)


16. Zixiang Pan, Yuefan Lin, Haokun Zhang, Yuansong Zeng, Weijiang Yu^#, Yuedong Yang. "A Meta-learning based Graph-Hierarchical Clustering Method for Single Cell RNA-Seq Data". IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2022


17. Tian Li, Xiang Chen, Zhen Dong, Weijiang Yu, Yijun Yan, Shanghang Zhang, Kurt Keutzer. "Domain-Adaptive Text Classification with Structured Knowledge from Unlabeled Data". International Joint Conference on Artificial Intelligence (IJCAI), Long paper, 2022 (Oral)


18. Weijiang Yu, Haoteng Zheng, Mengfei Li, Lei Ji, Lijun Wu, Nong Xiao, and Nan Duan. "Learning from Inside: Self-driven Siamese Sampling and Reasoning for Video Question Answering". Annual Conference on Neural Information Processing Systems (NeurlPS), 2021


19. Weijiang Yu, Yingpeng Wen, Fudan Zheng, and Nong Xiao. "Improving Math Word Problems with Pre-trained Knowledge and Hierarchical Reasoning". Conference on Empirical Methods in Natural Language Processing (EMNLP), 2021


20. Weijiang Yu, Jian Liang, Lei Ji, Lu Li, Yuejian Fang, Nong Xiao, and Nan Duan. "Hybrid Reasoning Network for Video-based Commonsense Captioning". ACM International Conference on Multimedia (ACM MM), 2021


21. Siyao Li, Shiyu Zhao, Weijiang Yu, Wenxiu Sun, Dimitris Metaxas, Chen Change Loy, Ziwei Liu. "Deep Animation Video Interpolation in the Wild". IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2021.


22. Weijiang Yu, Jian Liang, Lu Li, Nong Xiao. "Single Image De-noising via Staged Memory Network". ACM International Conference on Multimedia (ACM MM), 2020 (Oral)


23. Weijiang Yu, Jingwen Zhou, Weihao Yu, Xiaodan Liang, Nong Xiao. "Heterogeneous Graph Learning for Visual Commonsense Reasoning". Annual Conference on Neural Information Processing Systems (NeurlPS), 2019 (Spotlight)


24. Weijiang Yu, Xiaodan Liang, Ke Gong, Chenhan Jiang, Nong Xiao. "Layout-Graph Reasoning for Fashion Landmark Detection". IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2019


25. Weijiang Yu, Zhe Huang, Wayne Zhang, Litong Feng, Nong Xiao. "Gradual Network for Single Image De-raining". ACM International Conference on Multimedia (ACM MM), 2019 (Oral)